Scaffold Ga0066662

Basic Information
Taxon OID	3300018468 Open in IMG/M
Scaffold ID	Ga0066662_10001267 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300018468 Open in IMG/M

Scaffold ID

Ga0066662_10001267 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11441
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

11441

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (66.67%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California: Angelo Coastal Reserve

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F003430	Metagenome	487	Y
F007714	Metagenome / Metatranscriptome	346	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0066662_100012673	F007714	N/A	MPPETVPASSRRARRVALLLLGASLVLAAGGALWFLRFASQVRRDPAFIYREPATLEKLLKRANDAERAGDRATAITTYRFVMAVGQGAGADLAPYVVAARAGLSRLGAVDTLPGRPR
Ga0066662_100012679	F003430	GGAG	MRRSGGRAVEWSVGRLVAALRSAGPSFRLTALLLLCGCQAQARRLLLLDLALSDPALLNGTVRPWHDEGYTVEYRRFYPHLARTDLERYRVLLFLLGREPEAPSDALTAGDLALLTEWVLRGGVVVLGYDADGEGYLDRWTANRWLEFAGTGISIGDRLLEDTTVRALTTTGRPQPWAEGRPMGDEPLGSVFDPFPLDRNDVLATRDSSQLLAVTSRHAFVRAPRTPAPRARAGVVAAARIGDGLVVVISRHALGALGPQFRSTTAPAQQLDALDRTREFLGAVARWTRRPAEWAHVPPAARGGPLSLAQAPVPVELSPPLMSPPTGVDTIALPLLPDPKLARATSTPEWLRQQGMRVLWTPLFATRDGRRAVRSGASLDSLVALLDAGGFNLLAGDAGPESTDSLHTYWEERLAVRRAWADAVKRLQPTSVAWIPVHDLDKARHATADSSRGARGEALAAPCALDSILWAEGLPSAYGALGRLAAEQRTLVIALGLDIGGPRSYSMGQEFCDAAWRRGLAGLIRAGAAGGGWDSLPYAARYPALRDAGLLPRYYRALEDEVAARATVLRDRVLKQRRDLYFAFRLAQPPADWFTLGLLRGFGLPDRPLLLFTPEVWTRDLLALYRARGLNMVHAIALVPPSLRARDWSGVKRLAFYESDGFWVAPEEPAGPGAGRRLPPDSLGRLLRRLVR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0066662_10001267

Overview

Ecosystem & Geography

Associated Families

Sequences