Scaffold Ga0066662_10004557

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0066662_10004557

Scaffold Ga0066662_10004557

Overview

Basic Information
Taxon OID	3300018468 Open in IMG/M
Scaffold ID	Ga0066662_10004557 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6737
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (60.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001940	Metagenome / Metatranscriptome	614	Y
F007215	Metagenome / Metatranscriptome	355	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066662_100045575	F007215	GGAG	MRNKYIAVFVIALVAVAVLAWYQSLPRPPGGPTSPTAHWTEFVLTKNGNHTQVQASYSDGQVNTEQVLWLNFDNRTAVYNYFRCTPSMPGCTLDGCAFTVLNDAASEYRVKVYCAPGA
Ga0066662_100045579	F001940	N/A	MSGSQAVTMLSAKTRAKPRGTSIQGKDAAEIVAGVQAMYEKIPAFIRPMLPALPDILRRIPASAGKYTLNEIIELLDSAYETGKLKR

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