NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0066662_10007422

Scaffold Ga0066662_10007422


Overview

Basic Information
Taxon OID3300018468 Open in IMG/M
Scaffold IDGa0066662_10007422 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5502
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010022Metagenome309Y
F014723Metagenome260N
F071052Metagenome122N

Sequences

Protein IDFamilyRBSSequence
Ga0066662_100074221F071052GGALKKRIGLLAVLMITVMALLVSPVYSATMNPQENVNLYTGNKLIIDSNQPSIKSVVVRGNLTAATLSNNAYPSKNFTLTTDSTQLYTVDLLLSFQAPYTSEIVISDPSSGSKTQFTSYFVSGGDLNLTIFASFQTAPSPGPSVPLGWSSFY
Ga0066662_100074222F014723GGALSEQYHRLFLRWEVLRGWIPAIIFAAVCVSLELLFFYNALNTGFVDKTVSIPIGSWTLPISIALFLSLGNALVVVTLWMNVFESTAYVRAGPDKQIRRILYPLRMIRTAALVLAPFTIILFAPYIVEANWFVNAVASIQAFKQTTESFYSWAFNVSQIDGATRFIISQLSAALGALTIAGLQLWRVKGTKNLVRAFRRRK
Ga0066662_100074223F010022GGAGLLALALLFGVSYPEGLLFSIPLSILNIILGLLTRTPPGLEIQPESANLRLVIDRGVVRASIYQLVFLNSKLILKRLSSVMVTVILAFVLAVVGLEVLGIVGALMGGITGFSMQEFLTQRMRNKIGSEMQLTSVGESDIEIEYDDLVEVRLVKSRLYLITHSNSLSASFPRGYSGKIKPMLANIFGSKFTDEESVRAAEAAEKENEKSQHPRGDRGKFSRR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.