NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066662_10007985

Scaffold Ga0066662_10007985


Overview

Basic Information
Taxon OID3300018468 Open in IMG/M
Scaffold IDGa0066662_10007985 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5352
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008075Metagenome / Metatranscriptome339N
F009595Metagenome315Y
F013400Metagenome / Metatranscriptome271N

Sequences

Protein IDFamilyRBSSequence
Ga0066662_100079852F009595GAGGLRSDMIEIFQGTLVQCFSQSLESLFGRPVKDQLMRVLADHKIPRSEIGTRFDDVAKVLTDVFGSSSRLLIYKTVVELYDEYSVRANFGFYDSLRDQILYLRERVLADIIKPRHSPSIDDSIYITPRRPID
Ga0066662_100079853F008075AGCAGGMRQSPGFANVFEASVAEGLANTLGAIVMQTLKSVLSYSFETYAEKPSELHRELSRVFGSGATTLERMITNELFRRLDLQYSNELDFEASVNLARRDMVISERGNN
Ga0066662_100079856F013400AGGAGMTDATLLTGMWIFAVLQLILEAGIVLYAYRLTRLTGSFRAWTMIILAFILTTASSLFGIVLLLINPDLIAGLVQSISLPTLIVSYAVSIATSLLFFFGVFDLVRRFKLAAKKPPGAGSST
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