NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066662_10015772

Scaffold Ga0066662_10015772


Overview

Basic Information
Taxon OID3300018468 Open in IMG/M
Scaffold IDGa0066662_10015772 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4089
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003458Metagenome485Y
F076915Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0066662_100157721F003458N/AVLNTWLFQGNGLGASLIAIVGIVSATLGLWIVSVDFDELRSLFSRCDGWIFTVPLALVAADVYLTLIVLSTNPQIVELNPFVSSAIGIGASALIPFIISYLALSQGLGLFMLRVGSYLFGPLKSYRYLPFVLICGAAGFGPASNLVLFLDPDVGVAAYVIGALGCAMLSTILFTRVEKLA
Ga0066662_100157724F076915GGAGLTTTMASGTTSAVQKQKATLEEEVFKLKLEWMMAKNDDEKRRISEEIRRRIGFTPSTSQ
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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