NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066662_10025199

Scaffold Ga0066662_10025199


Overview

Basic Information
Taxon OID3300018468 Open in IMG/M
Scaffold IDGa0066662_10025199 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3424
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003391Metagenome / Metatranscriptome489N
F007411Metagenome / Metatranscriptome351N

Sequences

Protein IDFamilyRBSSequence
Ga0066662_100251992F003391AGGAGMRKIRKITRDKKGIDTILAALLMVVIVVVAAVMVYAWSTGLLSTLLVQNPVPKEALNIESFSYGSNTNLTLNVRNTGSVAIAFASYYVKNATSAQYARLNWPNDAAKMYPASVAPNGLVTVNIAISSACLNTSPASCSGATFTFTSGLSYTVTLVTTRNNQFVWSGSR
Ga0066662_100251994F007411AGGAMSLVRWARKTVDRNRRSRKAISTIMANLTMLIIVVSLSSLLFIWAVSSFGAYQGGAGYWFSSRSVANQERMSIEGAYFYAPGNGQNYALIYVRNVGTIPFTIVSVYINSTLYNSPNTFPVLQVNVSQVAPICPSSNGICGPPPNGGGINMHFTQPTVGHGDTQTVTIATQRGTVLTTTWV
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