NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066662_10045882

Scaffold Ga0066662_10045882


Overview

Basic Information
Taxon OID3300018468 Open in IMG/M
Scaffold IDGa0066662_10045882 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2745
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024084Metagenome207N
F043826Metagenome155Y
F055991Metagenome138N

Sequences

Protein IDFamilyRBSSequence
Ga0066662_100458822F055991N/AVPVLPEPKPVIDLTHRPFQEFRVATLDELMKQLETAGQGIDVLTIEGVPHLVCGKPLANILVQTDAVKHVPGDLLAIYQYCQGCKTATRVL
Ga0066662_100458823F043826N/AMGRSWRDTPRFVRIVLLLQAMIIVGLSAWIYNEYVNNQYLQMYLFSLFQGRGSVIAVVGFGGLLGTALIGILLKAGNILGEIEHLSEKVEDRTVVTPTRSGRSTLMPVLQIKQAEPVDEIGRLHRSLLRWNERSKGRQ
Ga0066662_100458824F024084N/AMAQRVKYEMRSETLSCLSLPTPKKLMELQETINEDLTKASLPEVRIGGFRLPDQALEITFERETVTGENRDRLWEIINAHYKKLLRELELKE
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