Scaffold Ga0066662_10104508

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0066662_10104508

Scaffold Ga0066662_10104508

Overview

Basic Information
Taxon OID	3300018468 Open in IMG/M
Scaffold ID	Ga0066662_10104508 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2017
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000149	Metagenome / Metatranscriptome	1910	Y
F022706	Metagenome / Metatranscriptome	213	Y
F088573	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066662_101045082	F022706	GGAGG	MPLRLVPLALLLGTSSALAFDISKLGQWGSLPLDDLTPVIAKSAELQQEINKALSESNKKQGDVMCVGMRFPGQWKNLGGLRVSPYTCDFGAKWLQIHAAVRITNRRGQAFETITAEAMKNATNVSETNLNWKWTTECTPRSIPGWCP
Ga0066662_101045083	F088573	N/A	MKSGLQELIALSLLAAFGCGLALAHGDLFFVAVFGGASAVTIIEAIRRLR
Ga0066662_101045084	F000149	GGAGG	VTLIVYYLIFMIAGDFAAYFLGLLVEYEWGSYASLIVFLVLYFLFLWVSWLLAVWVTKPRVATQSGS

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