NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066662_10300307

Scaffold Ga0066662_10300307


Overview

Basic Information
Taxon OID3300018468 Open in IMG/M
Scaffold IDGa0066662_10300307 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1348
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000822Metagenome / Metatranscriptome876Y
F001220Metagenome / Metatranscriptome744Y
F014644Metagenome / Metatranscriptome261Y

Sequences

Protein IDFamilyRBSSequence
Ga0066662_103003071F001220N/AQDGVSPSGQAQPRIIEMLADSDSRYKIAGERTPEIRVKAGETLLLRVTARRGKSWNRDGSIHGFSLLRAKDRTRVEGWDLLFKPGKQEFQLTAPAEPGEYVVVCTVICSEDHEGMHMKFTVLP
Ga0066662_103003072F000822AGGAGMIRTRLVYAVGMLSLAAVAYGQSAHVFHGEISDSQCAMNVHSLTRSHQEMLKSKSMGGTANTCTMYCIEHMGGYLVLSSGNDVYRLDRSDLVHGFEGQKVKISGVLDVKAKQIHVLKVELESTKD
Ga0066662_103003073F014644N/AGENFSVIASDMDKKEINNPKMTMNFLIWVGGVFMLLLFVFLAHFVWRVI
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