NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066662_10399262

Scaffold Ga0066662_10399262


Overview

Basic Information
Taxon OID3300018468 Open in IMG/M
Scaffold IDGa0066662_10399262 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1208
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004381Metagenome / Metatranscriptome440Y

Sequences

Protein IDFamilyRBSSequence
Ga0066662_103992622F004381N/AVTVTEWESAALVPVTPTWNVPPVAKVHESVELPDPVTLVGETAHDVLLVVRLTTPAKPFRPVIVMVEVAAVPGLYVTVVGLAEIVKS
Ga0066662_103992623F004381GAGVPVTPTCTVEAAANVQDRVALPEPVTLVGETVHDVLLVVKLTTPPNPLIPVTVIAEVPAALAFTVTEVGLAVIVKSWTTNVTVTE
Ga0066662_103992624F004381N/AVNVHDRVELPDPVTLVGETLHDVLLVARLTTPAKPLTADIVMLDVPAAFTLTVTLVGLAAIVKS
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