NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066662_12950413

Scaffold Ga0066662_12950413


Overview

Basic Information
Taxon OID3300018468 Open in IMG/M
Scaffold IDGa0066662_12950413 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)505
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004291Metagenome / Metatranscriptome445Y
F009247Metagenome / Metatranscriptome321Y
F015246Metagenome / Metatranscriptome256Y

Sequences

Protein IDFamilyRBSSequence
Ga0066662_129504131F015246N/ASQDDRIGGATPSGSGGDALLAGITTYVGVRPGMHLWLGMDWDVAHSTGAMFMPVRRHISLGITQQFRMHR
Ga0066662_129504132F004291AGGAGGMNTKKLALLALLVSMVSPVAQAQIKHIEMRVEGMT
Ga0066662_129504133F009247GAGVKQHLGRQSGVQTVEVSLRDGKVEVTPKEDGQIDPAQLLKATYDSGVTTA

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