Scaffold Ga0190270_10172632

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0190270_10172632

Scaffold Ga0190270_10172632

Overview

Basic Information
Taxon OID	3300018469 Open in IMG/M
Scaffold ID	Ga0190270_10172632 Open in IMG/M
Source Dataset Name	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1789
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location Name	USA: Utah
Coordinates	Lat. (^o)	41.136	Long. (^o)	-111.9047	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F039964	Metagenome	162	Y
F040315	Metagenome	162	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0190270_101726321	F040315	N/A	MSRLLRVGDKVINLDNIEYISRDESSVVRIHFMHLDIELWNEQGEAFRQWVLSNAGYCEGSGEGW
Ga0190270_101726322	F039964	GGAGG	MERTRTPVGTPGWLWVNLAAMGLSLAHTVADLGIIFGSLSSGFGVPQSLLSVLIAVLYTWWAWAFAKAVGGAKSWLVGLMVFDILWVGGNGLTILECPPPCSAVPVYADALHLGTLILAPLATYFAYRAIRRMSGPTSWLVMVGNIIIMGGLVIAIIAVLTSLASA

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