NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190270_10313184

Scaffold Ga0190270_10313184


Overview

Basic Information
Taxon OID3300018469 Open in IMG/M
Scaffold IDGa0190270_10313184 Open in IMG/M
Source Dataset NamePopulus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1406
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location NameUSA: Utah
CoordinatesLat. (o)41.136Long. (o)-111.9047Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000982Metagenome / Metatranscriptome814Y
F101460Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0190270_103131843F101460N/AMEAVLKRALILSLAAIAPAVLAAETLPPSGELGCDDIRLESCEFFDPASGLRLRLPRDWPMRRLRVSTETGPSAGVRQRYAERWVVIDYVPEEPSNPEVSLFHAAVMPRASWLRLSAGPDPTPGIEVATSPSLTVVAAQGRINPYPPDSRDAQIYEALIPTLEEISLILTLRPSR
Ga0190270_103131844F000982GAGGMPSYRSSSRATNLLQHQRTRGRSYPTPRYWERLYQMLEEEAEKRGKTPPPPPLTHGLEHELTEEDRLERLREQVSWADRNNLLHRIQMFFE
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