NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190274_10000170

Scaffold Ga0190274_10000170


Overview

Basic Information
Taxon OID3300018476 Open in IMG/M
Scaffold IDGa0190274_10000170 Open in IMG/M
Source Dataset NamePopulus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)44279
Total Scaffold Genes59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)50 (84.75%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location NameUSA: Montana
CoordinatesLat. (o)45.6356Long. (o)-110.571Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025043Metagenome / Metatranscriptome203Y
F026598Metagenome197Y
F034225Metagenome / Metatranscriptome175Y

Sequences

Protein IDFamilyRBSSequence
Ga0190274_1000017015F034225GAGGMADSSTQQMALTRDTGPGGFMERVTAMLSFVCSTILSEPSNTPYHQERAIFAQSVVRTPHQAATQAGPQIVMGVNVVASTTYDEETKTSVCTMADIDLQSQILTLWNSLAGIDTPT
Ga0190274_100001702F026598GAGMPIISFSDRDLLRGKVVEPAWYVVNIASIGEAPSKDGGSTNYPVEGWIVCNADSGSEEYKGVPLDWNFNSKAIGFAVGFLAALGVDVKAGARFDLANAAGKAIEVFVENGEWQGRIVNRVNHKYRALRGK
Ga0190274_1000017023F025043AGGAMALVGEFPGFAPANRRTIRAAVNPLDKSTVVSILPKYIHERKITIQPGVFEIPPGSFEKPAILVVGTSSWWREVDENQPLLEIPVSSIQVADSIVKDYCNGLLACNMSDMMPGIFYVPGEVDRERLKKEYMPLLLKAQATQKKWYFELIRVADILWSRTNGNPLSISDDARLACKELNITNKPWLGDIQTMELIRCVACGSLRNPTFPICQTCKAIADPVKAKELGLTFAQ
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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