NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190274_10011749

Scaffold Ga0190274_10011749


Overview

Basic Information
Taxon OID3300018476 Open in IMG/M
Scaffold IDGa0190274_10011749 Open in IMG/M
Source Dataset NamePopulus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5469
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location NameUSA: Montana
CoordinatesLat. (o)45.6356Long. (o)-110.571Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F064866Metagenome / Metatranscriptome128Y
F101365Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0190274_100117494F101365N/AMYQNKHLIYWINRYPKTMDLTLEDLIEALQYKLPGVTLEGTKFRGGFEIFLPIEGVTYTNEDGLTRQHYFIITVDSIKNAIRIYIYKEEWLNAGFDQIRAPFFTIINALKEYLKEHQAIDKLLSKIIS
Ga0190274_100117496F064866N/AMKTTYLTFLLSVFTVGFSFQLQAQINDSQLLAKYSYPIFAVTDNQQFTGTAFFYRSGDTSFLVSNYHAIKGMSPLKQAITFNADTLFLKYPVRSSDEFKIIGIDISEQNIGKTEIFSMVNRIDLLKVPVLVPEDADILFINDLIDEDYLDAEPEEVVLFGYPTDPGSVPVFYSQQQRLEGKVNPGGFTDYDASLRLNFPATSDDARAIMGGTARYYYFFRPYAAQGYSGAPVFGKFRNSNNEVIYRFTGVVFAGQPTTRQTWAIKGAVALQYLQGE
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