NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190274_10449657

Scaffold Ga0190274_10449657


Overview

Basic Information
Taxon OID3300018476 Open in IMG/M
Scaffold IDGa0190274_10449657 Open in IMG/M
Source Dataset NamePopulus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1269
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location NameUSA: Montana
CoordinatesLat. (o)45.6356Long. (o)-110.571Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000667Metagenome / Metatranscriptome949Y
F015101Metagenome257Y

Sequences

Protein IDFamilyRBSSequence
Ga0190274_104496571F000667AGGMKSGRSRKGRQHGNGAPDESIEAPLIWTFTGPFATCLADMEDTFRRAIIQVGDVSRIVVQIDLSLPQLKKRVDAGESIQPAWGQFVDRLTQRYGLPTDPRVRHVKIAGPLATMVIAYRR
Ga0190274_104496572F015101GGAGMAIKGWVVHKVNRLFTRVDLPPRATPLGKAVMRQQGEKREPELRTTAGHDVLPRPQHLGAYAPLVAAMREELEQFVAGHVRMHLAIAEQDRYLLTSIEVECVAGDEPRELLQRFIREFKPRQIKAYIAKEVIGRLPNASAIDLAHFGGLNVAADGGNAVEDDEAYGELLAELRSSEPRTASRPYQVTLKGRWSEQDLQAAGAKEGARGFDVPRTPLAGRSLEVEIDDANGSRHVTLTSVVPGRRYTVGNGDGADIMVSGKYASRRHCEIWQDKGAWWV
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