Scaffold Ga0190271_10003782

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0190271_10003782

Scaffold Ga0190271_10003782

Overview

Basic Information
Taxon OID	3300018481 Open in IMG/M
Scaffold ID	Ga0190271_10003782 Open in IMG/M
Source Dataset Name	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	9563
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (83.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location Name	USA: Utah
Coordinates	Lat. (^o)	41.109	Long. (^o)	-111.7531	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039964	Metagenome	162	Y
F059713	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0190271_1000378215	F059713	AGGAG	VDIVQGERAETELTAFIERRSRKGEADPEEREELWKESVRRYNARRREVNRLAWCDYFSHLAGALRARAEEYEGRAKRLMQGDQEIGEA
Ga0190271_100037824	F039964	GGAGG	MERTRTPVGTPGWLWVNLAAMGLSLAHTVADLGIIFGSLSSGFGVPQSLLSVLIAVLYTWWAWAFAKAVGGAKSWLVGLMVFDILWVGGNGLTILECPPPCSAVPVYADALHLGNLILAPLATYFAYRAIRRMSGPTSWLVMVGNIIIMGALVIAIIAVLTSLASA

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.