Scaffold Ga0190271_10133016

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0190271_10133016

Scaffold Ga0190271_10133016

Overview

Basic Information
Taxon OID	3300018481 Open in IMG/M
Scaffold ID	Ga0190271_10133016 Open in IMG/M
Source Dataset Name	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2366
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location Name	USA: Utah
Coordinates	Lat. (^o)	41.109	Long. (^o)	-111.7531	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006538	Metagenome	370	Y
F041055	Metagenome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0190271_101330162	F041055	AGGAG	MDEARITRPSPPSTRTIVADEAFCKQVAVHLLCDRAPIHDAFIGEPAEEVLEMVRWALSHQDDERFDPAKVLTAWAKKRGRGVWSGRPRRPQRHSEGDLTWALASFWAEHPRELAQLLERVQARVNANGRS
Ga0190271_101330165	F006538	AGGAG	MSCELCGGGDMWIKTCRTPEGSRLLVCDVCYEEHVSVLVIVPGDRVVVARCDYCWRYGNPREFVEVRPGGRKNAYAGTCAECADEEES

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