NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066669_10000409

Scaffold Ga0066669_10000409


Overview

Basic Information
Taxon OID3300018482 Open in IMG/M
Scaffold IDGa0066669_10000409 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13517
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (47.37%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022852Metagenome / Metatranscriptome212N
F030030Metagenome / Metatranscriptome186Y
F088687Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0066669_1000040917F088687GGAGMSDKVDRRQRVAFADDSSDENLRGSIIKGKQALAVKENEFRWDNPSLSLIASALRILTDQNNIMMKQNELILRELESRPTTVKSK
Ga0066669_1000040918F030030N/AMSIGENAYDVLSNEAKNRDVTVQQLLRAVVVPDWIKQNSNGQPIGENDSNLLQPPIYGGESRNSRTLVSPVARLRH
Ga0066669_100004096F022852N/AMSRLTVTIPYSVRISRELLDEMRRLFDRMEPPKPTFSAVLSHIVKLGWDSYKAQKNGERSLQNATVATYTKRIQGEAYPR
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