NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066669_10000617

Scaffold Ga0066669_10000617


Overview

Basic Information
Taxon OID3300018482 Open in IMG/M
Scaffold IDGa0066669_10000617 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11866
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008075Metagenome / Metatranscriptome339N
F009595Metagenome315Y
F027474Metagenome / Metatranscriptome194N
F046305Metagenome / Metatranscriptome151N

Sequences

Protein IDFamilyRBSSequence
Ga0066669_1000061710F046305AGGAGLREAMLTIGTLLLFFGGLGAIAATTPMGEGALITQATLVQMGWSISIFTVIAFIGAALIIRNR
Ga0066669_100006172F008075AGAAGGLGTSVYKSGHKGPEKRGKQMPESREFANMFQVSVEEGLGNTLGVSVMQTLRNLFSYSFEIYAKKPLELHRELSRVFGFGAITLERMITKELFRRLGLDYSAQLDFETSVNLARRDMIASERGDN
Ga0066669_100006173F009595GAGGLRSDTIETFQGTLVQCFSLTLEILFGRPVKEQLMRILAEHKIPRSEIGARFDDVAKVLTDVFGSSSRLLVYKTVVGLYEEYSVRANFGFYDSLREQLLFLRERVLSDILKPRHSPSIDDSIYITGHIQDD
Ga0066669_100006179F027474N/ALPARLMTDQAANWKIHVKKGSYEVEVEGPNPERVEKMFDELVKKYMKKIASP
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
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