NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066669_10001951

Scaffold Ga0066669_10001951


Overview

Basic Information
Taxon OID3300018482 Open in IMG/M
Scaffold IDGa0066669_10001951 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8210
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (45.45%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011833Metagenome286Y
F016379Metagenome247Y
F042822Metagenome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0066669_1000195110F016379N/AMPGYPERFVKLLYGIILAQFIVIAILLAGFSAEYLSNIYFRIWVDSNFPQLGLLLTGQVDALLIGMALGGTILLIQRVKNEASIAERTTATLGRPSSLAQSSDLLPNHATRTTIVEVATETPDQVLGELDKHDF
Ga0066669_100019514F042822N/AMLLITIILLIVVFYWRLFVVRDLNLLETVFWIIFPDLASFIPIGLAVRGAKEWPRWGPTLYNFFHTLLVWIPVFAIWSLLSGAVQWPFLGWAGHITADRSVGYYLRASTRRPD
Ga0066669_100019519F011833AGGAGGMKAFIASFVKGQILLFAPQLALILLILYDRVSFYYGAPVVISLAVLWGWFDYSGKAQRRGASVLKKLERLVDDFGWLNFQEGGGAGSEMVVALLDKASFGSSTLTTPQLAMATTEKIKEVYFTLELWYFSMRQKVRLLLRKAASMIEYDLLEVVNEFIEFYGEFVEKVAEETLRLVAKGDLTSLESEREGFSTFKTRLAELRGRANAFLQSLRDDGLPVSETKVRALEVDPWFKTGTEISETKQSPQ
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