NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0066669_10003103

Scaffold Ga0066669_10003103


Overview

Basic Information
Taxon OID3300018482 Open in IMG/M
Scaffold IDGa0066669_10003103 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7084
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008609Metagenome / Metatranscriptome330Y
F010607Metagenome / Metatranscriptome301N
F015844Metagenome / Metatranscriptome251N

Sequences

Protein IDFamilyRBSSequence
Ga0066669_100031032F008609AGGALVGFGIAAYYITSQTNLIGGRTHSTYPLGGIGLAVVGALIAAGGVMMGKAGAKMAGQFKCAKCGMTFGSQIALDQHSKDKHGM
Ga0066669_100031033F015844N/AMLLDPVSTRRVFEEKMTETMYRHAMSTAFKNWHSLGLAAVLYAVNVFLLSIGKDMINTSSQSFGGWVVLVVAGYLFIGAVYLVSATLTENSTLSESFPGVIDHFRTFIVGAIAYAIGYFLLFNVAPPLQTTQTLAAAVTLIVGGAIYLVAILVGVAAAFVRPRK
Ga0066669_100031036F010607GAGGMVKVDHYRVVARFARLFPDPAVFEDQDHLVERYLTQSGLLREKASYLYQNEDEIIPVDDSGKPAVASGTASFRFQGKNIIAEFMPNASLAVEYYDFGTGLSPEDHARMWKKQHIGEMAFQVRDFAHETRTLNVTNISELYEIMKKQGQATSLSSIELATMPEDLFRVTVAYLKSQLRESAGEDALEVEVYAARDLSASERSSLEKRLTRESTGSTVYVILSKPSQLMKIETR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.