NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066669_10003827

Scaffold Ga0066669_10003827


Overview

Basic Information
Taxon OID3300018482 Open in IMG/M
Scaffold IDGa0066669_10003827 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6626
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016133Metagenome249Y
F043324Metagenome156Y
F058040Metagenome135N

Sequences

Protein IDFamilyRBSSequence
Ga0066669_1000382710F043324AGGAMLKAARFNGDTFRELRDDPTGTAQSLSLVAIVGLCYGAGLGLFGFFAAGISMLELLTITLIGLLAAILVALVWSATSLLIVTKLFRRRIGYWGFARPFFFSWTPGLLFILMSGPSAIVFEIVRATSTVWIGIASVFAVKNAVDISTQQSMLTFIASTVFLIFVSALVLSLIQFLIIG
Ga0066669_100038277F016133GAGVVSRLPKFMQTLDDIIYRELEKIAKRRGITIQELIRAVIVPEWINGHHSVEVRDTTPAKLNSWR
Ga0066669_100038279F058040GGAMVQDKILCFVCSVKGIERTFATYYELQDHLYKDHDMTKDPAMEIFAKSKIPVSKAATGQDSSK
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