NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066669_10004399

Scaffold Ga0066669_10004399


Overview

Basic Information
Taxon OID3300018482 Open in IMG/M
Scaffold IDGa0066669_10004399 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6325
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027476Metagenome / Metatranscriptome194N
F033736Metagenome176N

Sequences

Protein IDFamilyRBSSequence
Ga0066669_100043994F027476GGAGMVGWGFAFGRGFVVLLWSIVWAIVAGIVGVLVIGGSLSSLVSNPTAVTSNPTGFITGFLAASFLGIFLIIFIAVIGLYATIVKVAVDGALSQLEKSGQYNRGSSSTGSQSMGSQPTLVAPAMRKFCANCGTALPGGTAKCPNCGASL
Ga0066669_100043999F033736N/ALAVIVAGVAGYSLGQTGGYASGYSTGYSDGNSDYNKIQESINSTELNYYGYLQLVLSKLAVDSQNKSVKSPGAGFNSLYSVFKSANASLTVFGQNLTLCNPTAKGDFQLIKMNTGNSNFTSLYQTICLYYLKLANDYTGPLTSFTLQNLSNDFTLLAINLLNLDSVIQTYP
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