NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066669_10014392

Scaffold Ga0066669_10014392


Overview

Basic Information
Taxon OID3300018482 Open in IMG/M
Scaffold IDGa0066669_10014392 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4182
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004003Metagenome457Y
F004186Metagenome449Y
F025117Metagenome / Metatranscriptome203Y

Sequences

Protein IDFamilyRBSSequence
Ga0066669_100143921F025117GAGGMNDYYSLYTWAMDKQAHLEREATQRRLVRHSRYVTTHENARPRWPFPRRRADDRKAA
Ga0066669_100143924F004186N/ALLLIVGVAALAAGCGVPTPAAPTANEVLAKPQQSDLKDAHFTVTGKITDNGTTVDLVGDGALAYKPKLAGRFKFTTNVGGQEVTIQEISLDGTNYGLTPASPKWMATKSTSGIDPSAFAGASEQKYVGEENLPQGKAWHATAKDKDGNAFDAYVREKDGYPIKYVETQTGGQNITLTFDKYNTGETITAPPADQVQQG
Ga0066669_100143925F004003N/AAVGLLAACGGPGAPLGPPSAKDILSKPLHTNLNDAHFVVSGKFVSSTPGGVAVDVHGDGALVYKNSGAGRFKFETTVAGQKVSYQDISVNGVDYTLVVPGNGKWTAKTTTSGLGRDSFTGASDFAYVGEENLSSGKSWHAKAKDKDGNQFDGWIRESDGYPVKYEITQQGNALNLSFDKYNTGESITAPPASQVVQG
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