NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066669_10116594

Scaffold Ga0066669_10116594


Overview

Basic Information
Taxon OID3300018482 Open in IMG/M
Scaffold IDGa0066669_10116594 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1892
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Peregrinibacteria → unclassified Candidatus Peregrinibacteria → Candidatus Peregrinibacteria bacterium CG_4_9_14_0_2_um_filter_53_11(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043305Metagenome156N

Sequences

Protein IDFamilyRBSSequence
Ga0066669_101165941F043305N/ALILGIWLAVTLTFEPVTSSLTMYGNEAYVLPAFPTWYIALTVAVAAPVILYPSLLLLSSLRRAQTSYTRNSLLLMLSSWLCFPTVGLVVFFLLSPMIPFSYELGLILSSALYCLLAISIRTLPGTTRFLKTSLFPQSLIKFGKRYLVLHDTSMRSISFLSSAFRSTIEAGAKVVLKSSATWLVDGLSRNDSRFKEWTENGKFVTSSARSDDKRFGKEGLSDKFGLSQTATVFVKELERQDLQGSMVSIARDSKNEPEAEVLLLESSQAPRPQVADFLQKNGDVELVNLSEASDPFSTLVNLDHPKIEGSKILLEYSSNSNFEDLVKKFFDEGIANAEMCTLFTSKSSKLYRALKGKRMVRIVAASSLVSAPDETPDGEIQIPDKELGLVTSLVTDLFENNKSVALSFVFDSITELIRGERWEQVYSGIKQLIELLSPSTVTAIFLVSKETTEERFLGALRGLFSVQMRLDDTEGQALRVVKAEF
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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