NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066669_10481840

Scaffold Ga0066669_10481840


Overview

Basic Information
Taxon OID3300018482 Open in IMG/M
Scaffold IDGa0066669_10481840 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1071
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018762Metagenome233Y
F062641Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0066669_104818401F018762N/AQETLNTLGLYVQQYNRVNAGVQEGVRLVRGRQLRGVLDQVVGSEFPQFAQLQRDFRGALVDASVLRGDLELTYGAAPSTNFPISRKKRLDAADATATLGLLEASRAEMVSQQEELDADDIESRAGVASPGGAAKLSAAANGAMLRSQAYDQRLLARLMRLEALKIARENSIEKEQEQIREGQVNAVSDLVGGMKLSYGLGDSRGQ
Ga0066669_104818402F062641AGGGGGMDLGSISRFLAALGGLWSRAEQYLPLILGIALPLAAVVFTFSMLQSFFQDAPEEDYFRIMGRFGITLAILGDYRSLFEQFNQLSSDLAHRFGDPNSFQVFFQQIQSQFSSLGTVLAFAANMSGSIVTLLTLLAAIILVIAYLGLVVGQAFA

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