NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193235_100305

Scaffold Ga0193235_100305


Overview

Basic Information
Taxon OID3300018499 Open in IMG/M
Scaffold IDGa0193235_100305 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_051 - TARA_N000000196 (ERX1782145-ERR1712092)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterCanada's Michael Smith Genome Sciences Centre
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1101
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameIndian Ocean: TARA_051
CoordinatesLat. (o)-21.4752Long. (o)54.3236Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003184Metatranscriptome502Y
F008676Metatranscriptome329Y

Sequences

Protein IDFamilyRBSSequence
Ga0193235_1003052F003184N/AMARVNLMKNIVTSRRQPHTPLDNVNTPYNPIRLLKGAPPGQEAVNHYISELSIVKGGNHKLDTKYRKHLAMIEACEDEYNYHHKLFGQGAVDRDFQFHNPQLVKDYVNQIRRV
Ga0193235_1003053F008676AGGAGGMKVYDYNQEFGGNYYQPMIQYINHKDIYGPFSKKADVYLPHSAEVTSAKYTNMRYNDKSSAKHNLDQFLIDAHKTQIKELNGTTASVMNTRMRHETHNTDLHPTPTSKLIRDHYIKLVKNLALRDEVDLPPLLC
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