NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193235_101066

Scaffold Ga0193235_101066


Overview

Basic Information
Taxon OID3300018499 Open in IMG/M
Scaffold IDGa0193235_101066 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_051 - TARA_N000000196 (ERX1782145-ERR1712092)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterCanada's Michael Smith Genome Sciences Centre
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)775
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: Euk_MAG)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameIndian Ocean: TARA_051
CoordinatesLat. (o)-21.4752Long. (o)54.3236Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F104405Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0193235_1010661F104405GGAMFGGDFSAFVFDSHGSVMGNRNSHGGNMVTDGIGKVVSKEMLGISLSFTFDQTDMSGMTAMFGYDIFADFFVFNFLVDSDFFGTDFFGHGVARFGYEVLCRVSAVRCGISNGGMSQPLGLRGGLSQSGENAKNSYFGDHGQLPTIVFRTEVCPH
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