NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0188850_1001513

Scaffold Ga0188850_1001513


Overview

Basic Information
Taxon OID3300018601 Open in IMG/M
Scaffold IDGa0188850_1001513 Open in IMG/M
Source Dataset NameMetatranscriptome of marine microbial communities from Baltic Sea - GS679_3p0_dT
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1459
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Source Dataset Sampling Location
Location NameBaltic Sea
CoordinatesLat. (o)56.1664Long. (o)16.378218Alt. (m)Depth (m).3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038696Metatranscriptome165Y

Sequences

Protein IDFamilyRBSSequence
Ga0188850_10015131F038696N/AVEFADATLEEVSSIVIPAIINESESDQRFIYTLHSRFEEIRTALASNNQEVFQLNAEEQAESGLHKSCRVQQDEACTNKRNCEMELYRRWTVWVTEEEELREIHGHISGHFCPPDANGTLHAFRVASVPWMQQYMAQKILVDEAEHSYDIHAPECVITHNALDHKAATCDAHQTSLEQKACAHALKITDVLATYYNDFAQAQSAYNCAIEEIMQLERDRKREWITLQVVNCLLGRVHALNGRPCDTETGEVDNEIAFCEQGHYVDVCSAEDGEPRLCLDYPPIPPCPPSCPARDQVIGICLPVVQSVPCEGEWHNQEYANLPAVPLPPFSETNPGCNAYPECVGCPELPSPAPVTIDSCPGYTVDGCIGNDEEAGEHPLTFVRDVDGLADVRCCSIDGDTCQSQGFEGGVDFVTPNGGTHTQCYFDVTYQQAMDVCHNAGMRMCTSDEMQTCCGTGCWHNHHAIWVDVRSDQAQLD
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