Scaffold Ga0192878_1047780

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0192878_1047780

Scaffold Ga0192878_1047780

Overview

Basic Information
Taxon OID	3300018630 Open in IMG/M
Scaffold ID	Ga0192878_1047780 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_067 - TARA_N000000750 (ERX1789440-ERR1719452)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	Canada's Michael Smith Genome Sciences Centre
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	624
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Gymnoplea → Calanoida → Calanidae → Calanus → Calanus sinicus	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	South Atlantic Ocean: TARA_067
Coordinates	Lat. (^o)	-32.2188	Long. (^o)	17.7054	Alt. (m)		Depth (m)	5
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014982	Metatranscriptome	258	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0192878_10477801	F014982	N/A	LDSLLKEFQNNMLPRVSLIFLSSVFHQSFAPVPRCSPFIIINKIPESTSLGADFNPYFPVPECEYGGPLQAMLAGDFKSVSLLADGAWKIPRHNAYELLWLFTKGPAKIRKYITGEEQFEFDPSILVEGYSHDRGTKRLGSNEHRDTTAIDNDELFKRGIHDLLAEEKRRRR

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.