NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0188867_1000236

Scaffold Ga0188867_1000236


Overview

Basic Information
Taxon OID3300018642 Open in IMG/M
Scaffold IDGa0188867_1000236 Open in IMG/M
Source Dataset NameMetatranscriptome of marine microbial communities from Baltic Sea - GS695_0p1
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterJ. Craig Venter Institute (JCVI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2027
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Source Dataset Sampling Location
Location NameBaltic Sea
CoordinatesLat. (o)54.570232Long. (o)11.332183Alt. (m)Depth (m)19
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033501Metagenome / Metatranscriptome177Y
F067130Metagenome / Metatranscriptome126N
F080236Metagenome / Metatranscriptome115N
F085730Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0188867_10002361F033501N/AMNAEEFVNEMDMIAQNYFGEFGYDTCSSGEKKAVIQLLLHNTK
Ga0188867_10002363F080236AGGAMNNIYDKKFEIYLVQKGYDLNCISLNECLKEIKLWKKNTENV
Ga0188867_10002364F067130N/AMQIEIDTVDLQNTLEQLYDRKVKLVAYASADGLDTLVLEGHEEDLFNFYLESFNPFNEWTNTDVVRSEFFAHILTK
Ga0188867_10002365F085730N/AMNYKEENWYNDIIDRLKDNEGMDQDDFYDVLHQEIDNMVIYNSESQRIVDDLNYDVFQEHDVYGRADNIGQAAYAALYDLFEEGDFTYEDYNNKPITQ
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