NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0192999_1002309

Scaffold Ga0192999_1002309


Overview

Basic Information
Taxon OID3300018663 Open in IMG/M
Scaffold IDGa0192999_1002309 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_109 - TARA_N000001784 (ERX1782465-ERR1712058)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterCanada's Michael Smith Genome Sciences Centre
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1368
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameSouth Pacific Ocean: TARA_109
CoordinatesLat. (o)2.0649Long. (o)-84.5546Alt. (m)Depth (m)380
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001387Metatranscriptome708N
F015818Metatranscriptome251Y

Sequences

Protein IDFamilyRBSSequence
Ga0192999_10023091F015818N/AHGQVPKTTYESVTKKDCRSVPDTVCADVQERKCQITQRPVQETVSRKQCRIELRKDCKTAQDTRKQCSTVQDEQCYSVPELKCVNVPRTVTETVHEEECSTQYDQECSTSFENKCSPVDEKKCTTGTEAKCEVVNQKECKTVQDEVCEDIPSKQCRVVSDRQCSKVPKQECRNVARRQCKTVYGKECKTVYGRECNPVTKQVCEKVGCDH
Ga0192999_10023092F001387AGGVTTEECRDAPKQECNDVPKEECNDVQERQCETVEKEECQTVPRTECSETSNRQCRSFPKQECTDVPKLQCIQVPKVDCQMLSRQSCSEVPSRNCQQKARRVCSLVPKIQTKEVNDRQCSTHQRNVCQPISKQVCNDVNEPRQVCNDVPEEVCDNVSAPVTKYVDDEQCSNVGSRKCSPATRQECTDVVEQVPRQTFETECKTEYTQECSQPRSGGYGN
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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