NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0192983_1005284

Scaffold Ga0192983_1005284


Overview

Basic Information
Taxon OID3300018684 Open in IMG/M
Scaffold IDGa0192983_1005284 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_085 - TARA_N000001034 (ERX1782225-ERR1712160)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterCanada's Michael Smith Genome Sciences Centre
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1376
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium rassoulzadegani(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameAtlantic Ocean: TARA_085
CoordinatesLat. (o)-62.21Long. (o)-49.2245Alt. (m)Depth (m)90
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007607Metagenome / Metatranscriptome348Y
F007863Metagenome / Metatranscriptome343Y

Sequences

Protein IDFamilyRBSSequence
Ga0192983_10052841F007863N/ATGMNGDEDLGEDIIMKGKPFHYDQRPANDKLFSTGMNGDEDLGEDIIMKGKPFHYDQKPANDKLFATGMNGDEDLGEDIIMKGKPFHYDQKPANEKLFATGMNGDEDLGEDIIMKGKPFHYDQKPSNEKLFATGMNGDEDLGEDIIMKGKPFHYEQKPASDKLFATGMNGDEDLGEDIIMKGKPFHYD
Ga0192983_10052842F007607N/AMNGDEDLGEDIIMKGKPFHYDQKPSNEKLFATGMNGDEDLGEDIIMKGKPFHYDQKPSNDKLFATGMNGDEDLGEDIIMKGKPFHYDQRPANDKLFATGMTGSEDLTVQPVKAEP
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