Basic Information | |
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Taxon OID | 3300018775 Open in IMG/M |
Scaffold ID | Ga0188848_1000171 Open in IMG/M |
Source Dataset Name | Metatranscriptome of marine microbial communities from Baltic Sea - GS679_0p8 |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | J. Craig Venter Institute (JCVI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 8698 |
Total Scaffold Genes | 27 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 25 (92.59%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
Associated Families | 6 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea |
Source Dataset Sampling Location | ||||||||
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Location Name | Baltic Sea | |||||||
Coordinates | Lat. (o) | 56.1664 | Long. (o) | 16.378218 | Alt. (m) | Depth (m) | .3 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F002502 | Metagenome / Metatranscriptome | 553 | Y |
F021020 | Metagenome / Metatranscriptome | 221 | Y |
F029774 | Metagenome / Metatranscriptome | 187 | Y |
F042350 | Metagenome / Metatranscriptome | 158 | Y |
F062573 | Metagenome / Metatranscriptome | 130 | Y |
F099390 | Metagenome / Metatranscriptome | 103 | N |
Protein ID | Family | RBS | Sequence |
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Ga0188848_100017111 | F062573 | GGA | MSGDLKEFEVIESKAYIVHAFDEAHALRKFGNYDYVSEGDTWPDVRELGPVNMIGTAPG |
Ga0188848_100017116 | F042350 | GGAG | MPGRESDYERGYLRGVAAMMNLISSDKVKRLDKTNVLQYARELVEAEREREANAPRNY |
Ga0188848_100017124 | F021020 | AGGAG | MSETISLNNSIMTNNYDLNIWDRRGYETEYQEEGWEISVYQYPYTGAQYGSGTFMEDYTIVLTPTEAKRLTLGWGEDLGGDYTPDADFWLDKDTFFETYTDIPERVANLLWALPSYAQLDAYREVG |
Ga0188848_10001716 | F099390 | GAGG | MLSNRVNMTDGYWVSDDTGVSVHGGLDSDGIIDALKLMDIESGEIVGIWESQGISYIDRSYHFRKKDTAMKVAEKFEQISIWDNANSKALDIRYH |
Ga0188848_10001717 | F002502 | AGGA | MENITVGSQFTTQKSGVTGVVQEIVKNANGTSRVLLSVDGQDRWTTVK |
Ga0188848_10001718 | F029774 | GAG | MARSISVKVPTSLLISQIEERIAQIDKDIEEYPAKREAFEKAEEAYKSEVANFVAAYLGENLDKIGYGYEDIIRINTGYVGYRSNGGKVELTFDTDAIVGFPKRPEAPQSPNQNESFGREYTTRKSLLEKNLRILKMTSQEEVNASTYGAIMEII |
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