NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0192839_1028480

Scaffold Ga0192839_1028480


Overview

Basic Information
Taxon OID3300018777 Open in IMG/M
Scaffold IDGa0192839_1028480 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_052 - TARA_N000000589 (ERX1789605-ERR1719349)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterCanada's Michael Smith Genome Sciences Centre
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)854
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameIndian Ocean: TARA_052
CoordinatesLat. (o)-16.9672Long. (o)53.9337Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025211Metatranscriptome202Y

Sequences

Protein IDFamilyRBSSequence
Ga0192839_10284801F025211AGGAMSLVCRVLRNSKCTTRLVRPFANEVSMELSDLERAAGHGRITPWHYTVPADWKDTRSELNKAQHRGEIPDYDKNKGAARVANRMDPLMPDMDAVCKKVDSMKDEDGVFQAPHCRELPSMSFNDCMVNYHFDYIGLKSPPFGEAEISEIESKTTITRDNIHHGRYEWLNLDPDMIDMTALVDDMMEMYKKGVSYRTINLWLDYISGSGTLYADSIRNLNWTRIDS
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