NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193251_1026327

Scaffold Ga0193251_1026327


Overview

Basic Information
Taxon OID3300018789 Open in IMG/M
Scaffold IDGa0193251_1026327 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_083 - TARA_N000001380 (ERX1809763-ERR1740128)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterCanada's Michael Smith Genome Sciences Centre
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2026
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameAtlantic Ocean: TARA_083
CoordinatesLat. (o)-54.3826Long. (o)-65.051Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048081Metatranscriptome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0193251_10263272F048081N/AMVEVMDKCEKAIAEVLADKIYTSNEFKKVKETFSSIAKSLEQSEVKEWLESTKETLMADRDAKSKGDEENKLKAVLGRFDALLPKVQDTKKACDSLWKAYQYTDELTPHMEWLVEKRVLATRDINSNSAGETEELIEKQEKVIDQLDKKRKVFQENIAKGTKLKDDPKCPAFLAAEVKKASDLWDETNKTALDRLNRLRDNLSAWEKFESKRNDLADKIAVGDRELDDIKKVYDLAAGDMDHKNRLKTATTIRKDIEGVFKVVDDANNIVQVLLTEDMKAELNEQVSDLKARAAVNDQIDEKLKIIDAFNGKLKNYISVLAELEAWNAGGRKRMDELLNPPAEISAEDRVLQTMELGEDITGQIEIHQKQQSLWDSEMAPSQAGEESAESKELVSRMGTVYTLLSTLNEESEAEAAKFGEDVKHLADVTNSNKKFDPWIMKSEEKVKAGMKKASSLGEATTTLDELKKWQEETEKMKKTIDGGNEAAHKMSMHDEADRVYAANCKKWEAVAAAIKDWISKMEALVKMWESQAATADKVTAALSAPATSEMKLEDLEAHLNSLKQMFIDKQKMMDGMNPSA
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