NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187842_1025047

Scaffold Ga0187842_1025047


Overview

Basic Information
Taxon OID3300018790 Open in IMG/M
Scaffold IDGa0187842_1025047 Open in IMG/M
Source Dataset NameOligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - SP09_SKY_41
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1956
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → unclassified Comamonadaceae → Comamonadaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)46.008Long. (o)-89.701Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010467Metagenome / Metatranscriptome303Y

Sequences

Protein IDFamilyRBSSequence
Ga0187842_10250472F010467AGGAMKKLFTNAVIVEKDFLSPKVLKRWQETIFDNLKIFGPDVEPEYGALAAFYGMIESGLNESYFRFAARHNKYLEKKFPEIKEIISYAGSKILTHSGLKFDALPIVPRDRNYFLIGGFNLQLSAWELYNIHTDTEGLILYPESIFNPNTRAYSCVVSVKRTARFVKNRGGDLEIWHERWLAHELDKFYKFDRAQARSKINKKILSFEEGNLILFDSFMPHAVLPFKVNRKQDSRISLVVHFNYRKWTERNPFPHLEYWY
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