Scaffold Ga0192928_1048029

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0192928_1048029

Scaffold Ga0192928_1048029

Overview

Basic Information
Taxon OID	3300018793 Open in IMG/M
Scaffold ID	Ga0192928_1048029 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_076 - TARA_N000000876 (ERX1789367-ERR1719325)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	Canada's Michael Smith Genome Sciences Centre
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	765
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Monothalamids → Reticulomyxidae → Reticulomyxa → Reticulomyxa filosa	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	South Atlantic Ocean: TARA_076
Coordinates	Lat. (^o)	-21.0716	Long. (^o)	-35.3964	Alt. (m)		Depth (m)	150
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F010522	Metatranscriptome	302	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0192928_10480291	F010522	GGA	MLSRRTFAVEKGEERVDGRLDGLMMTEEEIDKELETHFDEEGSYKPPHMDNFVSMTRRDVMMNVRIPPLGIEPPPFGEEQIKEITEKTTLTRDNIEWARKHWADDSIKPDQKKHGVIAYDMLEMYKKGVSFATINLWIDYYSGADTGSENGIYNKSWARIDS

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