NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193606_1000781

Scaffold Ga0193606_1000781


Overview

Basic Information
Taxon OID3300018839 Open in IMG/M
Scaffold IDGa0193606_1000781 Open in IMG/M
Source Dataset NameSoil crust microbial communities from Colorado Plateau, Utah, USA - late stage, 18 hrs after wetting v1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterQB3 Vincent J. Coates Genomics Sequencing Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9709
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Biological Soil Crust Microbial Communities From Moab Desert, Utah To Study Responses To Pulsed Climate Events

Source Dataset Sampling Location
Location NameUSA: Utah, Colorado Plateau, Green Butte Site
CoordinatesLat. (o)38.712053Long. (o)-109.695097Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007252Metagenome / Metatranscriptome354Y
F096282Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0193606_10007811F096282N/AMRFEHRGETIELFLVGIHHPHHPKKIWEEARAIWKVVINGKENSGTRSGDREKVLADQKAFIDWLIDDPDMKNIF
Ga0193606_100078111F096282N/AVVEYVYAAKLFKIAIYNIYTMRFEHRGWIIELFLVGIHHPNYPYKVWEEARAIWKVVIDGRENSGTRTGDREKVLADIKAFIDWRIDDPDMKNIF
Ga0193606_100078114F007252N/AMKKNKTGHGGARPGAGGGRRWKHGRTKLVRLPVALVDKILEVARYMDQNEGRLPLPDSVVIFPADYPAQSLSSDQARKEIFAKQKARRQAEQEMFGDE
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