Scaffold Ga0192970_1011894

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0192970_1011894

Scaffold Ga0192970_1011894

Overview

Basic Information
Taxon OID	3300018848 Open in IMG/M
Scaffold ID	Ga0192970_1011894 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_084 - TARA_N000001442 (ERX1789421-ERR1719148)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	Canada's Michael Smith Genome Sciences Centre
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1476
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Mediophyceae → Lithodesmiophycidae → Lithodesmiales → Lithodesmiaceae → Ditylum → Ditylum brightwellii	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	Atlantic Ocean: TARA_084
Coordinates	Lat. (^o)	-60.3046	Long. (^o)	-60.5715	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004045	Metatranscriptome	455	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0192970_10118942	F004045	AGGAG	MAELRLSEGTGRSLSKRVVAALSVGATLLLAPAAFYGGVAYGSHSTTPQSAAMDLVVQKDVIESEPKMQNCAATTENCMANKCCMTSGAKCWRISDTTAKCSKLCPGGNCWVEKPGYAFKPAYMTRDNSIFCYAVHAVKPGNGITGEKALAILSAQLKNNVGLFACNDWEVFSDQPAQLSPTISTRAVPANAEYGKFFRKDKPDHYINTPLFYEAWKLLKADGRWAAMSWVVKVDAPTVFMPDRLRTILATKKDDQTGVYFQNCKEVLEGFFGNLEVVTAEGFKRFLEQMDTSFTSGCWRQDTEACKKGWKYGTWGEDLFMQRTMDDAEVSKISDFSLSSSGTCPGDRPKDKKKDTKFVPTCNPGETKAAVHPFRDVKSWFQCLGTMTGKQYS

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