NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193005_1036808

Scaffold Ga0193005_1036808


Overview

Basic Information
Taxon OID3300018849 Open in IMG/M
Scaffold IDGa0193005_1036808 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_128 - TARA_N000002287 (ERX1789411-ERR1719439)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterCanada's Michael Smith Genome Sciences Centre
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)748
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameSouth Pacific Ocean: TARA_128
CoordinatesLat. (o)0.0222Long. (o)-153.6858Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030404Metagenome / Metatranscriptome185Y
F062799Metagenome / Metatranscriptome130N

Sequences

Protein IDFamilyRBSSequence
Ga0193005_10368081F030404N/AMILALCTSALAFAPPRRGPCWTPLAFGRRDDVERWRSTADALTAWRGDEATVAKCWRIDCDDDGFTWERRWPGRKSQIEDVAWDRITRVCWECGEWLCMDNFHLIADHEDREWVVPSGALNYQRLVDVLYRKGLFSSKTYVECQCVSDGGFTICEANPNAKAPEPVPPS
Ga0193005_10368082F062799N/AHDPSIRQALQQRRFATAQKPQAPTPQLRVALQQRYGELATQKLQSQKPRDSGKVRQLVASTGAAYRAPSCDPWSRGQLFR
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