Scaffold Ga0193308_1020816

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0193308_1020816

Scaffold Ga0193308_1020816

Overview

Basic Information
Taxon OID	3300018862 Open in IMG/M
Scaffold ID	Ga0193308_1020816 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_102 - TARA_N000001652 (ERX1789608-ERR1719146)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	Canada's Michael Smith Genome Sciences Centre
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1036
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Pelagophyceae → Pelagomonadales → Pelagomonas → Pelagomonas calceolata	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	South Pacific Ocean: TARA_102
Coordinates	Lat. (^o)	-5.2669	Long. (^o)	-85.2732	Alt. (m)		Depth (m)	40
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F030404	Metagenome / Metatranscriptome	185	Y
F062799	Metagenome / Metatranscriptome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0193308_10208161	F062799	N/A	IIRHPLQATMGNIAARQASRSIYHDPSIRQALQQRRFASPPAWWAAHRSACGARTAQKKAQAPNPQLRVALQQRYGVVQAKKAPQDSGKVRQLVASTGAVYRAPACDPWARGQLFR
Ga0193308_10208162	F030404	N/A	MILALCTSAIAFAPPLRVLRLAPLAYGLRGDVERWQSTADALTAWRGDEETVSTFWRIDCDDDGFTWERRWPRRKPQIEDVAWDRITRVCWACGEWLCMDNFYLIADHEDREWVVPSGALNYQRLVDVLDRKGLFSTKTYVECQCVAEGGFTICEANPDAKAPAPSADLSYVDAQKGLFQEAAQASAAMSVVVLKYISLRRSVASSSHFPPLSTIAPRT

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