Basic Information | |
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Taxon OID | 3300018868 Open in IMG/M |
Scaffold ID | Ga0187844_10030970 Open in IMG/M |
Source Dataset Name | Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - SP09_SKY_50 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2638 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Oligotrophic, Dystrophic, And Eutrophic Lakes In Wisonsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 46.008 | Long. (o) | -89.701 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F020909 | Metagenome | 221 | Y |
F058137 | Metagenome | 135 | Y |
F096878 | Metagenome / Metatranscriptome | 104 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0187844_100309703 | F058137 | N/A | MVGKKIRSVRVSDQVWAKAKAKAQSEGKSLSEVIVDFLKGYIK |
Ga0187844_100309704 | F020909 | GGAG | MGELLMITKRGKKLRAIAIAVGIILIWQVASNLWWVGIDAPNAEFLGWCWGSMSECVLL |
Ga0187844_100309707 | F096878 | N/A | MYLEERDANLDLVEDVVTQVPMGSIQAINALSGLDLKSIESARLMDKARSAVPDLAIKLASVSESEALTLAEQLITAVKYARAMRSQPLATKLELVK |
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