Scaffold Ga0181564_10131639

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0181564_10131639

Scaffold Ga0181564_10131639

Overview

Basic Information
Taxon OID	3300018876 Open in IMG/M
Scaffold ID	Ga0181564_10131639 Open in IMG/M
Source Dataset Name	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011513CT metaG (megahit assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1521
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.972	Long. (^o)	-81.028	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F044531	Metagenome / Metatranscriptome	154	Y
F045110	Metagenome / Metatranscriptome	153	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181564_101316391	F044531	GGAGG	MQYLEDIRVSDENTHITDGNKELTTAEIGKGFWLCGFDRDGTCFEMTKISRSSAKDFMFDYGNYKLKDLDVTDLGTATYYWNEETCDGGILKVH
Ga0181564_101316392	F045110	GGAG	MTTTTKTKLTKKTIDAIAHNLIVDEAIQTAWAFVTNMQVNNEFEYAFCNSATGDYCDTLWHTTQNVKLGQSMDLIDAKDMADTAYDNFMCAFEDVNIAEITVEDVYKALDSIGGDTAMRENYYSNLRQHFKNFVESNTQYDLVAHPKWKGEYTLVSKHTQKQKEKMVRDYLNKYDAWEHIELNNDLEWA

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