NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193600_1001212

Scaffold Ga0193600_1001212


Overview

Basic Information
Taxon OID3300018877 Open in IMG/M
Scaffold IDGa0193600_1001212 Open in IMG/M
Source Dataset NameSoil crust microbial communities from Colorado Plateau, Utah, USA - late stage, 42 hrs after wetting v1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterQB3 Vincent J. Coates Genomics Sequencing Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5941
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Biological Soil Crust Microbial Communities From Moab Desert, Utah To Study Responses To Pulsed Climate Events

Source Dataset Sampling Location
Location NameUSA: Utah, Colorado Plateau, Green Butte Site
CoordinatesLat. (o)38.712053Long. (o)-109.695097Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011201Metagenome / Metatranscriptome293Y
F042710Metagenome157N
F083444Metagenome113Y
F096282Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0193600_10012121F042710GGAGMAEKSGENCERSQNFTASSARDCRYVDVLKARAEELGLDSDCVGDKRKRETWEAVLENHGEEKPAKPQFVAKPNQL
Ga0193600_10012122F083444N/AMSQVFSLEEIVWENTHLLPEHDKKVIYFVTTMQGESKTVLYIGFTVNLRKNFKNHHRRIEFEFLNKIGYQINISWIVLPDGTSHKEAQAVQMCYIRGFKPKLNHDQNSVAKVQDEELKKHIESRQQWRYEYLKKQIENWEQSGEDKDTIVKKIWEVCKEPVGDKNLNSLAT
Ga0193600_10012123F011201N/ALKQSHNSNKTMKKSKAKSKIGHGGARPGAGRLPLWKHRPLKMVRLPLAFVEEILKVAHYMDQNDGRLPFSQASEDLIIISGHPSKSLSGEEIKELAAREKARKLAERVMVGDEWVLVSDETFRNQH
Ga0193600_10012126F096282N/AVFPGYLKLLFTLSTTMKFQHRGETVELLLVGIHHPHYPDKIWELAKAVWKVEYNGKESCGTRSGDRDEVVADIKRGIDWLIDDPDMKNIF
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