NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193185_1016081

Scaffold Ga0193185_1016081


Overview

Basic Information
Taxon OID3300018886 Open in IMG/M
Scaffold IDGa0193185_1016081 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_038 - TARA_N000000029 (ERX1782302-ERR1711968)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterCanada's Michael Smith Genome Sciences Centre
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1463
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameIndian Ocean: TARA_038
CoordinatesLat. (o)19.0393Long. (o)64.4913Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001145Metagenome / Metatranscriptome765Y
F001219Metagenome / Metatranscriptome744Y

Sequences

Protein IDFamilyRBSSequence
Ga0193185_10160812F001219N/AMIFTTTFFVSESKLFDFDLTFVAQLILFTTLALVVTFKFINPISKEIDDRAEFINYTLRKSTILLTFGYEKLSDCVLLLSEEISELNRQTKLTRNYCNSNFEKEVNLVQQENLKLLSKLKGDLAIKSAFLFSNISNDLNSLTDKFFEKKFQSVS
Ga0193185_10160813F001145N/AMDWNTLSFFINEEPIVQLNPNILESNIQNIVILIGVLIYANNVSFSVSLEERQKDIIQTIENAQKDVSNASNYYYLAEKGFTQSLFWLQSWKILYEKDKVDLVNNKYQIVKTGLEETFNTTENLIKNFENKAFVSLQRYMIFITASRILRKFLFLSDTEQSKILEITISKLGGIKK
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