NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0193595_1001611

Scaffold Ga0193595_1001611


Overview

Basic Information
Taxon OID3300018890 Open in IMG/M
Scaffold IDGa0193595_1001611 Open in IMG/M
Source Dataset NameSoil crust microbial communities from Colorado Plateau, Utah, USA - mid-late stage, bundles v1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterQB3 Vincent J. Coates Genomics Sequencing Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8773
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Biological Soil Crust Microbial Communities From Moab Desert, Utah To Study Responses To Pulsed Climate Events

Source Dataset Sampling Location
Location NameUSA: Utah, Colorado Plateau, Green Butte Site
CoordinatesLat. (o)38.712053Long. (o)-109.695097Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001042Metagenome / Metatranscriptome794Y
F007252Metagenome / Metatranscriptome354Y
F012744Metagenome / Metatranscriptome277Y

Sequences

Protein IDFamilyRBSSequence
Ga0193595_10016112F001042AGGCGGMTTSHLIGGNFVSDFPKDSEAEADDKIVIDKLLINKLTELLINSIYSVHISRRSEIFLTSLDMHLAENSISNKNNKASYEFTEKSSLLLESYQKAVPKLLGKAENCLEEAIDLINLIVSASEAEGNNG
Ga0193595_10016114F007252AGTAGMNNKVQPFFEGVTLWEFKMKKSKQKSKDGRGGARPGAGGGARWKHGRTKLVRLPVALLDEILEVARYMDQNEGKLPPSARPLITLGHLSESLSGEELKEFLTKKKVRKLAEKVMCGDERVRVSDNTFKDLL
Ga0193595_10016117F012744GGAGMSYTDDCPAGRSQHLTRGVFFKNHAAKVYVLDCITHGTALEILSRAWAACRFESPDTAVYEHQWREYFGLPVMSLSAAANYYGLKVSELEPHIRKKNTYAGGLFESGMLVLRGAALEFARLIGHTAGIQQGLVLLPPRAVLSLCLYLRPVPAVAATVNAFWDYVLAEKLHESSPADWHYTSIQHVEIECSRIAEQKLIECSAFAKERKLYPYIQHFGCQTCLEAWASLFTYEGEFPPPRGSFYVERQDWFDRVSHISLWR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.