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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300018891 Open in IMG/M |
| Scaffold ID | Ga0193610_1000198 Open in IMG/M |
| Source Dataset Name | Soil crust microbial communities from Colorado Plateau, Utah, USA - early stage, 18 hrs after wetting v1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | QB3 Vincent J. Coates Genomics Sequencing Laboratory |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 28006 |
| Total Scaffold Genes | 36 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 21 (58.33%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Sand → Desert → Soil → Biological Soil Crust Microbial Communities From Moab Desert, Utah To Study Responses To Pulsed Climate Events |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Utah, Colorado Plateau, Green Butte Site | |||||||
| Coordinates | Lat. (o) | 38.712053 | Long. (o) | -109.695097 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F012744 | Metagenome / Metatranscriptome | 277 | Y |
| F066473 | Metagenome | 126 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0193610_100019814 | F012744 | GGAG | MSHIDDCPVRRSQHLTRGSLFKNHVAKVYVFDRIKHGTALEILSRASAACRFESPHTAVSEHQWREYFGLPVMSLSAAANYYGLNVSELEHHIRRKITYAGGLFESGMLVLRGAALESAREMGHTAGIQQGFVLLPPRAVLNLCLYLRPVPAVAATVNGFWDYVVAQKLHESTSADWYYTSSQHVEIECDRIEEQRLLECLAEAKERKLYPYIQHFGRQTCFEAWARLFTYEGEFPPPRGSFYVERQDWFDRVSHISLWR |
| Ga0193610_100019819 | F066473 | N/A | MKYYFKLIINGFKFGAAFNLITLILLAAYTLSVEYYFRPFSFAFNPSIELGTAVSGMKIFSDANPKNHALRPAWAKIQNDFSLFLPEFQLRADWPQPSPRLDKWCKGNKCCAHRIGFNDRRIPQFRCFTLDDWYLSNRDFLGSDLDRSVVSSLNSFLLRLPRGSRVIINEPYMLFADRRSFSTFTSWFLSLVAEHPHLKFEIGIQIHLQWVDSYWWQYHGWLIPALGQFGQKHNIRWGLSEFSIYNRLWKPRIAYGGATPERMRLIDRIESIIPDRFLNAVVAHQAYVLHSDALKAGATTFIEWGNFPTTWFAEAIDPQYKSVFALYDWDGEPQLMYWAIVRSLALPSPVKKS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |