NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193598_1003489

Scaffold Ga0193598_1003489


Overview

Basic Information
Taxon OID3300018910 Open in IMG/M
Scaffold IDGa0193598_1003489 Open in IMG/M
Source Dataset NameSoil crust microbial communities from Colorado Plateau, Utah, USA - earlymid stage, 18 hrs after wetting v1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterQB3 Vincent J. Coates Genomics Sequencing Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6980
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Biological Soil Crust Microbial Communities From Moab Desert, Utah To Study Responses To Pulsed Climate Events

Source Dataset Sampling Location
Location NameUSA: Utah, Colorado Plateau, Green Butte Site
CoordinatesLat. (o)38.712053Long. (o)-109.695097Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007252Metagenome / Metatranscriptome354Y
F012744Metagenome / Metatranscriptome277Y

Sequences

Protein IDFamilyRBSSequence
Ga0193598_10034892F007252N/AMKKSKQKSKDGRGGARPGAGGGCRWKHGRTKLVRLPVALLDKILEVARYMDQNEGRLPSFAPPVITSSVITSGHPSESLAWEELKELLAKRKAHELAEEVMAGDDQVWVSDETFKEFL
Ga0193598_10034897F012744GGAGMSHIDDCPAGRSQFLTRGALFKNHVAKVYVFDRIRHGTALEILSRASAAHKIEVPYTKVSKHQWREYFGLPVMSLSAAANYYGLKVSEIEHHTRKKNTYAGGLFESGMLVLRGAALESARLMGHTAGIQQGLVLLPPRAVLYLCLSLSAVPAVAATVNALWEYVLAEKLNESTSVDWYYTCNQHVEIDGERIKNQLLTKCLAEAKKRNLYPYIQHFGHQNCSKAWVRLFTYQGEFPPPRGSFYVERQDWFDRVSHISLWR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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